I think it would be pretty clear it was fiction, based on the outro talking about the author's fictional works or the lack of introduction of the perspective character and their name, history, location; those are the sorts of things you include in human interest pieces that are written similarly.
> We commissioned this new short story from Robin as a little love-letter and thank-you to the city and people...
Sure, it's right at the bottom, and "short story" is not entirely unambiguous, but I think most people would commonly use that phrase to refer to a work of fiction. I think I would have enjoyed it just as much if I'd known it was fiction from the start, but making that too obvious at the beginning may have removed a little of the charm.
Edit, the author, Robin Sloan, is a fiction writer. That's... a little disappointing, but still it was a wonderful story.